Basic Information
Locus ID:
nbisL1-mrna-13255
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 4888156 | 4891639 | - | nbisL1-mrna-13255 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 30,117.90 Da | 66.12 | 97.09 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 78 | 126 | 2.12528E-17 | - |
| Pfam | PF12906 | RING-variant domain | 78 | 125 | 1.3E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 73 | 129 | 1.36E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 130 | 9.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 77 | 126 | 4.9E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 70 | 132 | 19.807516 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 43 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021616198.1 | E3 ubiquitin-protein ligase MARCHF1 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2KMN9 | Membrane associated ring finger 1 8 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology