Basic Information
Locus ID:
nbisL1-mrna-13237
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 7405217 | 7408911 | - | nbisL1-mrna-13237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 98,191.60 Da | 41.62 | 91.16 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 570 | 841 | 1.76795E-94 | - |
| Pfam | PF13855 | Leucine rich repeat | 370 | 428 | 4.4E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 92 | 150 | 1.6E-6 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 567 | 836 | 4.4E-48 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 65 | 1.0E-5 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 327 | 365 | 0.021 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 56 | 440 | 1.19E-50 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 539 | 838 | 1.62E-79 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 640 | 864 | 2.3E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 323 | 7.3E-72 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 328 | 450 | 7.1E-33 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 527 | 639 | 3.7E-36 | - |
| SMART | SM00220 | serkin_6 | 564 | 842 | 3.6E-47 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 188 | 211 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 391 | 415 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 114 | 137 | 7.7E-4 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 564 | 842 | 41.346909 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 116 | 137 | 7.026593 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 570 | 592 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 687 | 699 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 907 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 466 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_002308106.2 | receptor-like kinase TMK4 [Populus trichocarpa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2WKZ6 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_029118 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology