Basic Information
Locus ID:
nbisL1-mrna-13231
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 7351490 | 7365583 | + | nbisL1-mrna-13231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 44,095.34 Da | 35.95 | 82.16 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 109 | 385 | 7.13043E-93 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 108 | 382 | 3.4E-45 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 84 | 382 | 9.57E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 187 | 389 | 1.1E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 88 | 186 | 2.4E-30 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 103 | 389 | 37.657936 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 109 | 140 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 231 | 243 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17220.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021644273.1 | probable serine/threonine-protein kinase PIX13 [Hevea brasiliensis] | 0 |
| Q9SII6 | Probable serine/threonine-protein kinase PIX13 OS=Arabidopsis thaliana OX=3702 GN=PIX13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2JDG9 | Uncharacterized protein MANES_12G008100 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.341 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13229, nbisL1-mrna-13231 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3717 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16746 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.225 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014961 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16545, nbisL1-mrna-16546 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14713 |
| Salicaceae | Populus euphratica | 1 | populus_peu11166 |