Basic Information
Locus ID:
nbisL1-mrna-13225
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 7292302 | 7295948 | + | nbisL1-mrna-13225 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 54,934.23 Da | 50.31 | 89.03 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 124 | 160 | 1.2E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 218 | 258 | 3.3E-4 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 261 | 308 | 2.4E-14 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 109 | 164 | 1.96E-6 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 177 | 423 | 2.88E-46 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 173 | 449 | 2.2E-35 | IPR015915 |
| SMART | SM00612 | kelc_smart | 273 | 321 | 1.5E-7 | IPR006652 |
| SMART | SM00612 | kelc_smart | 225 | 272 | 3.6E-7 | IPR006652 |
| Coils | Coil | Coil | 482 | 484 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55270.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021895231.1 | F-box/kelch-repeat protein At1g55270-like [Carica papaya] | 0 |
| Q93W93 | F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g55270 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J8T1 | Uncharacterized protein MANES_14G131300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16821, jg36142, jg3894, jg8027 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_10528, gene_10529, gene_2881, gene_9001 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah004865, Ah006755, Ah006756, Ah014372 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g071280, BVRB_8g194720 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18056, Sbi_jg40727, Sbi_jg50734, Sbi_jg62682 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1283, Seu_jg2288 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007938, GOSA_00014348 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23802, Sgl28968, Sgl42057, Sgl46833 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000008487, gene:ENSEOMG00000010200 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.4AG0000370, CQ.Regalona.r1.4BG0000430 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30054510, pistato.v30255470 |
| Apiaceae | Apium graveolens | 2 | Ag4G01493, Ag9G01387 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G000590, COCNU_03G002730, scaffold003431G000030 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103698626, gene-LOC103703764, gene-LOC120111764 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2443.V1.1, AsparagusV1_02.916.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri15G27464, Ftri16G11254, Ftri17G32952, Ftri3G06063 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G55270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011496m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g40940.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g026140.2N, BniB07g001120.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G2241, Ceq06G0651 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G2344, Cgl06G0677 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g02330 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g37270, gene.Thate03g20500 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.985, evm.TU.LG09.414 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005462, Pov_00011510 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03887, Lb5G28036 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2093, AH07.763, BH01.2457, BH01.4788, BH07.893 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0105490, gene-QOZ80_2AG0124000 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0037020.1, HORVU.MOREX.r3.3HG0330040.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_021435, gene-QYE76_060556, gene-QYE76_070504 |
| Poaceae | Oryza coarctata | 5 | Oco03G004540, Oco04G005370, Oco05G003920, Oco06G003990 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g10850.1, LOC_Os03g07160.1, LOC_Os10g26990.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G246000, gene-BS78_01G468100 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101271, Pt_Chr0400336, Pt_Chr0604615 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G014280, Chr15G015130 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G241600, Tel3E01G903900, Tel4E01G475500 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1BG025100, gene_TRIDC3AG075750 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS1B02G154600.1, TraesCS1D02G136700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb005230_P001, Zm00001eb006840_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33443 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12409, Zma_g16031 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1121, evm.TU.LG20.751 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g04560 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.347, evm.TU.Scaffold_7_RagTag.1739 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13225, nbisL1-mrna-19788 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-13157, nbisL1-mrna-3722, nbisL1-mrna-6360 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16752, nbisL1-mrna-17692, nbisL1-mrna-22620 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.24, evm.TU.utg000018l.955 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002880, Maker00011899, Maker00014759 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-16540, nbisL1-mrna-3054, nbisL1-mrna-5813 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11527, nbisL1-mrna-12422, nbisL1-mrna-14723 |
| Salicaceae | Populus euphratica | 3 | populus_peu04428, populus_peu04429, populus_peu35253 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132626050, gene-LOC132626418 |
| Solanaceae | Solanum chilense | 2 | SOLCI000666400, SOLCI004367400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010466, gene-LOC107011092 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.12090_chr02_-, STRG.28755_chr04_-, gene_9335 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G3794, TC10G1563, TC12G1342 |
| Zosteraceae | Zostera marina | 2 | Zosma01g07760.v3.1, Zosma05g22940.v3.1 |