Basic Information
Locus ID:
nbisL1-mrna-13224
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000224F_pilon | 2411163 | 2412302 | + | nbisL1-mrna-13224 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 42,727.71 Da | 31.84 | 87.26 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 100 | 377 | 1.45364E-90 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 99 | 372 | 3.0E-49 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 73 | 372 | 7.96E-76 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 58 | 169 | 5.5E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 170 | 375 | 1.5E-54 | - |
| SMART | SM00220 | serkin_6 | 94 | 377 | 1.1E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 94 | 377 | 39.156139 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 100 | 123 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 221 | 233 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42440.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021630031.1 | putative serine/threonine-protein kinase [Manihot esculenta] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2J0J4 | Uncharacterized protein MANES_12G141600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11645, jg23054 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_942 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022618 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl14947, Sgl20063 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000035016, gene:ENSEOMG00000047392 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0010930 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30283010 |
| Apiaceae | Apium graveolens | 1 | Ag3G01154 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G010620, COCNU_06G011290, COCNU_15G001950 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701245, gene-LOC103703254 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G06221, Ftri16G12194, Ftri2G00970 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42440.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016827m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g23230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g004490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1470 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07880 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g14010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1656 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036930 |
| Poaceae | Echinochloa crus-galli | 4 | AH04.390, BH04.398, CH02.163, CH04.415 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671620, gene-QOZ80_9BG0695110 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_064673, gene-QYE76_064805 |
| Poaceae | Oryza coarctata | 1 | Oco22G002870 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g06780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G067300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104230, Pt_Chr0104254 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G010060, Chr17G009100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G177900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG033070, gene_TRIDC4BG017270 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G207800.1, TraesCS4B02G111300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb202020_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-56614 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17618 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1082, evm.TU.LG17.1204 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g20430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1250 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18569 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17026 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13224 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.133 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011720 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20311 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-18456, nbisL1-mrna-18460, nbisL1-mrna-18465 ... |
| Salicaceae | Populus euphratica | 2 | populus_peu14909, populus_peu32586 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627359 |
| Solanaceae | Solanum chilense | 1 | SOLCI002242300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015891 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14185 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2027 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11800.v3.1 |