Basic Information
Locus ID:
nbisL1-mrna-13203
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 7126939 | 7130086 | + | nbisL1-mrna-13203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 35,616.80 Da | 43.92 | 91.16 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 65 | 116 | 9.38709E-20 | - |
| Pfam | PF12906 | RING-variant domain | 65 | 115 | 2.6E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 62 | 120 | 2.65E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 129 | 1.3E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 64 | 116 | 3.9E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 57 | 122 | 20.23991 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 41 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_050214852.1 | - | 0 |
| TrEMBL | A0A2C9ULA3 | RING-CH-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G128500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology