Basic Information
Locus ID:
nbisL1-mrna-13162
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 6743579 | 6753826 | - | nbisL1-mrna-13162 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 93,412.42 Da | 45.24 | 71.71 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 569 | 853 | 8.52413E-59 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 574 | 600 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 650 | 686 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 735 | 767 | 2.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 609 | 643 | 2.2E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 12 | 38 | 2.5E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 816 | 853 | 0.042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 563 | 853 | 1.63E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 555 | 698 | 3.9E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 699 | 853 | 1.2E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 604 | 643 | 2.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 814 | 853 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 562 | 601 | 7.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 773 | 812 | 6.6 | IPR001680 |
| SMART | SM00667 | Lish | 10 | 42 | 6.9E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 729 | 767 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 690 | 726 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 647 | 687 | 1.0E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 611 | 646 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 10 | 42 | 9.579782 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 611 | 646 | 11.154684 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 736 | 768 | 8.65015 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 569 | 600 | 8.676514 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 654 | 692 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 736 | 776 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 569 | 600 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 654 | 696 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 821 | 853 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 821 | 853 | 11.5765 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 630 | 644 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 158 | - | - |
| Coils | Coil | Coil | 110 | 130 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_025012233.2 | - | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LFU2 | Uncharacterized protein MANES_16G063800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23812, jg36775, jg4515, jg7842 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10680, gene_17844 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014460 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g043470, BVRB_8g195540 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24885, Sbi_jg30277, Sbi_jg43696, Sbi_jg8745 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18209, Seu_jg19857 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007878, GOSA_00025537 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl42132, Sgl46900, Sgl65816, Sgl65848, Sgl70158 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000012377, gene:ENSEOMG00000015678 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0001900, CQ.Regalona.r1.2BG0002970 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30252930, pistato.v30255910 |
| Apiaceae | Apium graveolens | 3 | Ag2G01750, Ag6G01333, Ag6G02377 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G016390, COCNU_06G000550, COCNU_14G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103717444, gene-LOC103721045, gene-LOC103722721 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2203.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G09639 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G32551.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024343m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g30330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g085900.2N, BniB03g009900.2N, BniB05g005520.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2275, Ceq06G0701 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2471, Cgl06G0723 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g13200, gene.Cymno06g02100 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32950, gene.Thate09g13400 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.1022, evm.TU.LG07.1396 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013700, Pov_00028813 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04995, Lb5G29275 |
| Poaceae | Echinochloa crus-galli | 8 | AH02.2273, AH02.2274, AH02.446, BH02.2375, BH02.2376 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0011820, gene-QOZ80_1AG0023900 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0240220.1, HORVU.MOREX.r3.3HG0270620.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_050459, gene-QYE76_053714, gene-QYE76_053715 |
| Poaceae | Oryza coarctata | 5 | Oco01G003190, Oco01G014210, Oco02G003220, Oco02G014440 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g08190.1, LOC_Os01g42260.1, LOC_Os01g42270.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G043200, gene-BS78_03G189500 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0200301, Pt_Chr0603269, Pt_Chr0603270, Pt_Chr0603285 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G015850, Chr02G020010, Chr03G005460, Chr03G010670 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G211000, Tel3E01G371400, Tel3E01G374600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG015340, gene_TRIDC3AG032470 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G123100.1, TraesCS3A02G217500.7 ... |
| Poaceae | Zea mays | 4 | Zm00001eb161690_P001, Zm00001eb161700_P005 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29302, nbis-gene-29546 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10632, Zma_g7713, Zma_g8184 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG18.380, evm.TU.LG20.1405, evm.TU.LG23.1137 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g24580, gene.Posoc09g11810 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.375, evm.TU.Scaffold_4_RagTag.1230 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13162, nbisL1-mrna-27338 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20641, nbisL1-mrna-3745 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1242, nbisL1-mrna-16779 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.769, evm.TU.utg000033l.253 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000110, Maker00015019 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16520, nbisL1-mrna-9740 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14750, nbisL1-mrna-986 |
| Salicaceae | Populus euphratica | 2 | populus_peu04822, populus_peu12834 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132643990, gene-LOC132644001 |
| Solanaceae | Solanum chilense | 1 | SOLCI006786400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023120 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.5619_chr03_-, gene_7980, gene_9305 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G1634, TC10G1624, TC12G1248 |
| Zosteraceae | Zostera marina | 2 | Zosma05g28810.v3.1, Zosma06g08660.v3.1 |