Basic Information
Locus ID:
nbisL1-mrna-13157
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 6675271 | 6678828 | - | nbisL1-mrna-13157 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 38,007.88 Da | 35.05 | 91.40 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 286 | 328 | 2.03798E-18 | - |
| Pfam | PF13639 | Ring finger domain | 287 | 328 | 2.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 280 | 333 | 3.93E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 269 | 332 | 6.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 287 | 327 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 287 | 328 | 12.666314 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 84 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017981962.1 | - | 0 |
| Q8LDB8 | E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2IX08 | RING-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.380 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13157 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3750 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16785 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.257 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014716 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16516 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14756, nbisL1-mrna-14757 |