Basic Information
Locus ID:
nbisL1-mrna-13130
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001779F_pilon | 1921742 | 1928676 | - | nbisL1-mrna-13130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.30 | 127,476.16 Da | 64.53 | 57.78 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 705 | 834 | 8.79667E-62 | - |
| CDD | cd00201 | WW | 23 | 52 | 0.00416416 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 717 | 825 | 1.7E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 510 | 680 | 1.3E-49 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 557 | 844 | 3.37E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 1.59E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 462 | 695 | 1.5E-86 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 696 | 866 | 9.2E-59 | IPR027417 |
| SMART | SM00487 | ultradead3 | 505 | 708 | 1.1E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 745 | 825 | 8.2E-35 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 6.1E-6 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.6792 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 517 | 691 | 31.050018 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 486 | 514 | 10.273145 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 720 | 864 | 25.964989 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 637 | 645 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1041 | 1057 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1058 | 1072 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1031 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 204 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021684464.1 | DEAD-box ATP-dependent RNA helicase 46 [Hevea brasiliensis] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9W721 | DEAD-box ATP-dependent RNA helicase 46 OS=Manihot esculenta OX=3983 GN=MANES_03G080100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology