Basic Information
Locus ID:
nbisL1-mrna-13126
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001779F_pilon | 1869690 | 1894179 | - | nbisL1-mrna-13126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 362,111.41 Da | 45.89 | 88.68 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 1542 | 1651 | 9.89563E-7 | - |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 2164 | 2456 | 3.0E-12 | IPR009543 |
| Pfam | PF00168 | C2 domain | 1541 | 1643 | 3.9E-6 | IPR000008 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1205 | 1289 | 9.1E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 897 | 1064 | 8.0E-11 | IPR009291 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 1524 | 1642 | 3.74E-8 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 1527 | 1659 | 1.3E-6 | IPR035892 |
| SMART | SM00239 | C2_3c | 1541 | 1653 | 9.3E-4 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1523 | 1654 | 11.380423 | IPR000008 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.2 | - | 0 |
| RefSeq | XP_021642898.1 | uncharacterized protein LOC110637210 [Hevea brasiliensis] | 0 |
| Q54LN2 | Intermembrane lipid transfer protein vps13D OS=Dictyostelium discoideum OX=44689 GN=vps13D PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2MAB9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology