Basic Information
Locus ID:
nbisL1-mrna-13084
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000224F_pilon | 1399676 | 1400710 | + | nbisL1-mrna-13084 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 39,633.01 Da | 65.15 | 71.51 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 229 | 270 | 1.32283E-23 | - |
| Pfam | PF13639 | Ring finger domain | 228 | 270 | 1.8E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 20 | 54 | 5.3E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 273 | 7.73E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 275 | 1.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 229 | 269 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 229 | 270 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 140 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021604703.1 | E3 ubiquitin-protein ligase RZF1 isoform X1 [Manihot esculenta] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6KQX3 | RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_023758 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology