Basic Information
Locus ID:
nbisL1-mrna-13084
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 6100221 | 6103085 | + | nbisL1-mrna-13084 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 47,344.93 Da | 61.56 | 80.93 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 116 | 159 | 1.0818E-20 | - |
| Pfam | PF13639 | Ring finger domain | 116 | 159 | 1.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 96 | 165 | 3.06E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 167 | 1.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 117 | 158 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 117 | 159 | 12.710573 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 345 | - | - |
| Coils | Coil | Coil | 213 | 233 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021641703.1 | E3 ubiquitin-protein ligase ATL42-like [Hevea brasiliensis] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2WMQ3 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_029549 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology