Basic Information
Locus ID:
nbisL1-mrna-13072
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 9392608 | 9397900 | - | nbisL1-mrna-13072 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 77,260.14 Da | 32.57 | 79.36 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 491 | 677 | 4.90731E-58 | - |
| CDD | cd10320 | RGL4_N | 56 | 345 | 1.44794E-75 | - |
| CDD | cd10316 | RGL4_M | 380 | 479 | 4.62846E-33 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 404 | 475 | 4.4E-24 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 489 | 676 | 3.3E-53 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 55 | 248 | 3.2E-90 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 486 | 677 | 1.79E-48 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 377 | 475 | 6.67E-9 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 58 | 339 | 1.76E-7 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1120 | - | 379 | 473 | 1.7E-9 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 487 | 677 | 7.6E-20 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 54 | 344 | 1.2E-10 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021675902.1 | uncharacterized protein LOC110661550 [Hevea brasiliensis] | 0 |
| Q0C7K7 | Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rglB PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X8AGH3 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_007986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology