Basic Information
Locus ID:
nbisL1-mrna-13071
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 9386147 | 9390344 | - | nbisL1-mrna-13071 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 73,075.52 Da | 32.89 | 76.96 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 446 | 633 | 1.78147E-59 | - |
| CDD | cd10320 | RGL4_N | 12 | 295 | 2.66778E-80 | - |
| CDD | cd10316 | RGL4_M | 335 | 434 | 6.51027E-33 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 444 | 632 | 9.8E-59 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 358 | 430 | 3.6E-25 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 5 | 204 | 6.5E-92 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 441 | 633 | 1.36E-52 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 14 | 294 | 3.11E-6 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 333 | 430 | 4.12E-8 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 442 | 633 | 2.0E-20 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 7 | 287 | 6.8E-10 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 332 | 429 | 6.8E-7 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24430.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_024450576.1 | probable rhamnogalacturonate lyase B isoform X1 [Populus trichocarpa] | 0 |
| TrEMBL | A0A8T2ZHE6 | rhamnogalacturonan endolyase OS=Populus deltoides OX=3696 GN=H0E87_004577 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology