Basic Information
Locus ID:
nbisL1-mrna-13053
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 9197693 | 9204007 | + | nbisL1-mrna-13053 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 112,506.77 Da | 54.07 | 72.01 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 527 | 829 | 1.5E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 77 | 114 | 5.1E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 116 | 2.62E-9 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 523 | 835 | 2.16E-84 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 65 | 117 | 9.8E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 519 | 842 | 4.9E-91 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.602668 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 527 | 832 | 49.416084 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 528 | 543 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 77 | 114 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 870 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 908 | 929 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 870 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 231 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021643095.1 | ubiquitin carboxyl-terminal hydrolase 17-like [Hevea brasiliensis] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L7C0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology