Basic Information
Locus ID:
nbisL1-mrna-13031
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001779F_pilon | 1282009 | 1283559 | - | nbisL1-mrna-13031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 57,216.01 Da | 56.99 | 74.05 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 467 | 508 | 1.5E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 445 | 513 | 1.57E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 429 | 514 | 3.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 467 | 507 | 1.9E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 467 | 508 | 12.135206 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 238 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02340.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021689685.1 | E3 ubiquitin-protein ligase CIP8 [Hevea brasiliensis] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6MES7 | RING-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_032128 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1666 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1967, nbisL1-mrna-2112 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9691 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2869 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.102 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18856 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13031 |