Basic Information
Locus ID:
nbisL1-mrna-12997
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 7509992 | 7518997 | + | nbisL1-mrna-12997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 124,667.19 Da | 38.91 | 82.25 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 481 | 0.035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 910 | 943 | 0.037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 339 | 372 | 0.22 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 328 | 656 | 3.11E-40 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 831 | 1091 | 1.28E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 955 | 1119 | 2.8E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 750 | 954 | 1.7E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 535 | 702 | 9.5E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 276 | 534 | 6.1E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 822 | 858 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 861 | 901 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 573 | 614 | 0.059 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.4E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1053 | 1090 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 483 | 524 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 904 | 943 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 434 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 527 | 570 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 440 | 481 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 994 | 1035 | 220.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 7.9E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 332 | 373 | 0.0092 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 911 | 952 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 340 | 382 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 911 | 946 | 9.203785 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.665112 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 587 | 623 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.352507 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1129 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021622866.1 | topless-related protein 3 [Manihot esculenta] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MSJ5 | Topless-related protein 3 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology