Basic Information
Locus ID:
nbisL1-mrna-12978
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
C4-type zinc-finger of DNA polymerase delta
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 7364571 | 7368276 | - | nbisL1-mrna-12978 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 92,967.41 Da | 52.82 | 57.68 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 370 | 398 | 4.3E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 404 | 431 | 1.6E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 363 | 399 | 3.92E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 401 | 433 | 1.3E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 400 | 9.6E-16 | - |
| SMART | SM00547 | zf_4 | 405 | 429 | 0.015 | IPR001876 |
| SMART | SM00547 | zf_4 | 372 | 396 | 6.8E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 403 | 432 | 9.269407 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 370 | 399 | 10.048569 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 374 | 393 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 407 | 426 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 660 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 816 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_052302205.1 | uncharacterized protein LOC7473293 isoform X6 [Populus trichocarpa] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2IUY3 | DNA polymerase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology