Basic Information
Locus ID:
nbisL1-mrna-12962
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 7273684 | 7277069 | + | nbisL1-mrna-12962 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 43,714.93 Da | 59.60 | 66.72 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 335 | 375 | 3.36874E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 334 | 380 | 2.2E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 330 | 381 | 7.07E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 320 | 385 | 5.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 336 | 374 | 0.001 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 314 | 386 | 4.1E-9 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 3 | 93 | 430.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 336 | 375 | 11.766381 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021684009.1 | probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Hevea brasiliensis] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1I9W0F6 | RING-type E3 ubiquitin transferase OS=Populus tomentosa OX=118781 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology