Basic Information
Locus ID:
nbisL1-mrna-12961
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 5095593 | 5097771 | + | nbisL1-mrna-12961 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 34,487.07 Da | 43.85 | 96.46 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 6.63585E-52 | - |
| Pfam | PF07650 | KH domain | 20 | 93 | 5.7E-13 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 193 | 254 | 3.5E-15 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 190 | 254 | 6.41E-14 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | 1.54E-25 | IPR009019 |
| Gene3D | G3DSA:3.30.1140.32 | - | 93 | 126 | 2.0E-5 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 91 | 3.1E-48 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 186 | 288 | 5.6E-44 | IPR036419 |
| SMART | SM00322 | kh_6 | 42 | 111 | 0.0084 | IPR004087 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 21 | 92 | 11.298677 | IPR004044 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_008787847.2 | 40S ribosomal protein S3-3-like [Phoenix dactylifera] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N5MD13 | KH type-2 domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_010391 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology