Basic Information
Locus ID:
nbisL1-mrna-12928
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 4696306 | 4698345 | + | nbisL1-mrna-12928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 74,439.14 Da | 31.37 | 106.67 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 406 | 675 | 2.97673E-104 | - |
| Pfam | PF13516 | Leucine Rich repeat | 63 | 77 | 1.4 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 88 | 147 | 1.6E-10 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 404 | 671 | 2.2E-45 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 7 | 296 | 1.05E-63 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 381 | 672 | 2.7E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 476 | 679 | 1.5E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 6 | 305 | 8.4E-88 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 362 | 475 | 2.4E-37 | - |
| SMART | SM00369 | LRR_typ_2 | 208 | 232 | 11.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 134 | 149 | 69.0 | - |
| SMART | SM00369 | LRR_typ_2 | 110 | 133 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 62 | 86 | 7.5 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 232 | 258 | 5.3 | - |
| SMART | SM00365 | LRR_sd22_2 | 62 | 88 | 160.0 | - |
| SMART | SM00220 | serkin_6 | 400 | 670 | 1.1E-33 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 256 | 289 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 134 | 158 | 1.8 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 400 | 679 | 38.576645 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 136 | 158 | 7.049695 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 522 | 534 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 406 | 429 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 134 | 147 | 1.3E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 65 | 78 | 1.3E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_002510817.1 | leucine-rich repeat receptor protein kinase EMS1 [Ricinus communis] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | B9R9E2 | Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis OX=3988 GN=RCOM_1496650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |