Basic Information
Locus ID:
nbisL1-mrna-12927
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 4694528 | 4696115 | + | nbisL1-mrna-12927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 56,712.52 Da | 32.77 | 113.32 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 7 | 43 | 1.1E-10 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 192 | 214 | 0.18 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 267 | 286 | 0.18 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 21 | 335 | 1.09E-51 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 238 | 513 | 1.96E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 189 | 330 | 1.1E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 331 | 523 | 1.0E-47 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 121 | 188 | 3.6E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 8 | 120 | 9.1E-27 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 141 | 164 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 214 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 93 | 117 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 165 | 189 | 8.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 69 | 92 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 262 | 286 | 71.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 312 | 333 | 7.796663 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 144 | 157 | 4.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 262 | 275 | 4.2E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024438409.1 | leucine-rich repeat receptor protein kinase EMS1 [Populus trichocarpa] | 0 |
| TrEMBL | A0A836DP95 | Leucine-rich repeat receptor protein kinase EXS OS=Salix suchowensis OX=1278906 GN=IMY05_012G0095600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |