Basic Information
Locus ID:
nbisL1-mrna-12926
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 4687904 | 4689784 | + | nbisL1-mrna-12926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 24,226.26 Da | 23.04 | 84.25 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 50 | 112 | 1.3E-10 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 156 | 218 | 8.5E-10 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 218 | 7.18E-27 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 124 | 224 | 8.1E-17 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 115 | 1.8E-15 | IPR036770 |
| SMART | SM00248 | ANK_2a | 200 | 225 | 1000.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 157 | 186 | 1.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 91 | 121 | 1.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 57 | 86 | 0.22 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 91 | 112 | 8.73634 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 157 | 189 | 11.75457 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 157 | 186 | 11.08139 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 91 | 112 | 8.720098 | - |
| PRINTS | PR01415 | Ankyrin repeat signature | 173 | 187 | 6.6E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 92 | 107 | 6.6E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021648639.1 | E3 ubiquitin-protein ligase XBAT33-like [Hevea brasiliensis] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6N4U5 | RING-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_027173 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology