Basic Information
Locus ID:
nbisL1-mrna-12896
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 6714433 | 6716947 | - | nbisL1-mrna-12896 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 45,136.11 Da | 54.38 | 72.78 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 25 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04560.1 | 0 | |
| RefSeq | XP_034908036.1 | uncharacterized protein LOC118044008 isoform X1 [Populus alba] | 0 |
| TrEMBL | A0A2P2K9F4 | VHS domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5332 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9949 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006310 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg16645, Sbi_jg61211, Sbi_jg61212 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22942 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008140 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24937, Sgl30081 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009468, gene:ENSEOMG00000028840 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0011440, CQ.Regalona.r1.4BG0011630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30183780 |
| Apiaceae | Apium graveolens | 1 | Ag8G01184 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G008460 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705469 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.678.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G13037, FtriNA20284 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G04560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020805m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g03400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g058990.2N, BniB07g033520.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2298 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g05760 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0197s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g00390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2217 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040071 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G21734 |
| Poaceae | Echinochloa crus-galli | 2 | AH07.3974, BH07.3790 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0150810, gene-QOZ80_2BG0206210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0630420.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G025580, Oco04G026060 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G323000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604452, Pt_Chr0604513 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G026530, Chr13G000600, Chr14G008790, Chr20G009560 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G718600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG054150, gene_TRIDC6AG058600 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G398500.1, TraesCS6B02G438500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb191150_P001, Zm00001eb259140_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8287 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14732 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1789, evm.TU.LG16.1288, evm.TU.LG20.1282 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09850 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1914 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3324 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12391 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13801 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.142 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005870 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12896 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16275 |
| Salicaceae | Populus euphratica | 1 | populus_peu15960 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614151 |
| Solanaceae | Solanum chilense | 1 | SOLCI000788300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002945 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.27256_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1986 |
| Zosteraceae | Zostera marina | 2 | Zosma03g15960.v3.1, Zosma03g16020.v3.1 |