Basic Information
Locus ID:
nbisL1-mrna-12892
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
MADS-box protein SOC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 4523465 | 4523683 | - | nbisL1-mrna-12892 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.44 | 8,161.53 Da | 51.98 | 90.69 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 59 | 6.69638E-35 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 7.4E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 61 | 5.1E-28 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 71 | 2.7E-23 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 7.8E-37 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.038813 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.5E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.5E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.5E-29 | IPR002100 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.14 | - | 0 |
| RefSeq | XP_021804055.1 | MADS-box protein AGL42-like [Prunus avium] | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4S0Y0 | MADS-box domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_003023 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology