Basic Information
Locus ID:
nbisL1-mrna-12874
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 4393475 | 4402865 | - | nbisL1-mrna-12874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 125,184.84 Da | 40.16 | 81.67 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 464 | 498 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 926 | 960 | 1.8E-4 | IPR001680 |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 347 | 457 | 3.92E-9 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 429 | 965 | 1.18E-44 | IPR011047 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 946 | 1116 | 7.85E-10 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 776 | 1077 | 1.2E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 333 | 579 | 6.2E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 580 | 689 | 2.9E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 411 | 451 | 6.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 547 | 588 | 21.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.2E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 351 | 390 | 3.3 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.9E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 921 | 960 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 833 | 875 | 77.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 498 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 634 | 675 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 631 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1012 | 1053 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 878 | 918 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 501 | 542 | 0.013 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 928 | 960 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 464 | 507 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.986525 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 928 | 969 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.923718 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1137 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_027333454.1 | topless-related protein 4-like isoform X1 [Abrus precatorius] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8JQ89 | topless-related protein 4-like isoform X1 OS=Abrus precatorius OX=3816 GN=LOC113848237 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology