Basic Information
Locus ID:
nbisL1-mrna-12863
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 4298142 | 4301184 | + | nbisL1-mrna-12863 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 69,691.41 Da | 41.06 | 104.94 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 227 | 250 | 1.5 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 546 | 568 | 0.48 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 252 | 275 | 0.0022 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 491 | 513 | 0.91 | IPR001611 |
| Pfam | PF12937 | F-box-like | 69 | 102 | 2.0E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 64 | 104 | 5.1E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 180 | 652 | 5.49E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 461 | 655 | 6.6E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 252 | 460 | 3.0E-40 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 160 | 251 | 3.9E-14 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 64 | 103 | 4.1E-6 | - |
| SMART | SM00367 | LRR_CC_2 | 279 | 304 | 1.2E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 359 | 384 | 0.39 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 201 | 226 | 0.17 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 227 | 252 | 8.2E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 545 | 570 | 0.026 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 571 | 595 | 64.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 438 | 463 | 690.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 518 | 543 | 36.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 597 | 622 | 15.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 253 | 278 | 8.6E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 411 | 436 | 63.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 491 | 516 | 0.36 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 385 | 410 | 0.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 465 | 490 | 250.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_011017769.1 | PREDICTED: EIN3-binding F-box protein 1-like [Populus euphratica] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JKB4 | EIN3-binding F-box protein 1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology