Basic Information
Locus ID:
nbisL1-mrna-12860
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 4361984 | 4363451 | + | nbisL1-mrna-12860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 13,790.92 Da | 41.95 | 90.32 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 26 | 120 | 5.3E-28 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 24 | 121 | 5.62E-31 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 9 | 123 | 3.2E-49 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 26 | 120 | 1.1E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 23 | 121 | 3.2E-40 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 48 | 63 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 81 | 95 | 5.6E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 24 | 37 | 5.6E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 59 | 74 | 5.6E-14 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 22 | 121 | 18.399542 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_021687112.1 | 40S ribosomal protein S20-1 [Hevea brasiliensis] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JVY4 | Ribosomal_S10 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology