Basic Information
Locus ID:
nbisL1-mrna-12830
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 4025201 | 4030410 | + | nbisL1-mrna-12830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 79,811.26 Da | 53.57 | 72.01 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 413 | 673 | 5.10509E-85 | - |
| CDD | cd01989 | STK_N | 2 | 117 | 2.0144E-38 | - |
| Pfam | PF00069 | Protein kinase domain | 410 | 660 | 2.1E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 389 | 665 | 1.91E-69 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 387 | 479 | 8.2E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 480 | 682 | 1.3E-49 | - |
| SMART | SM00220 | serkin_6 | 407 | 673 | 7.8E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 407 | 673 | 36.060795 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 525 | 537 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 722 | - | - |
| Coils | Coil | Coil | 273 | 293 | - | - |
| Coils | Coil | Coil | 305 | 379 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24370.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_021275534.1 | U-box domain-containing protein 35-like [Herrania umbratica] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835J6M0 | Protein kinase domain-containing protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf18G0112200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology