Basic Information
Locus ID:
nbisL1-mrna-12804
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 3777747 | 3784356 | - | nbisL1-mrna-12804 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 58,076.96 Da | 57.20 | 53.42 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 60 | 110 | 9.94251E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 129 | 191 | 1.2E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 208 | 256 | 3.5E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 141 | 7.07E-18 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 485 | 512 | 3.53E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 198 | 9.89E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 259 | 3.53E-17 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 187 | 442 | 2.4E-85 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 54 | 141 | 1.4E-17 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 483 | 512 | 3.4E-5 | - |
| SMART | SM00547 | zf_4 | 487 | 511 | 3.1E-5 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 129 | 191 | 4.2E-25 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 195 | 265 | 0.027 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 104 | 9.45016 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 485 | 512 | 8.467661 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 56 | 269 | 50.34465 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 489 | 508 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 484 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021632765.1 | probable E3 ubiquitin-protein ligase ARI8 [Manihot esculenta] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LQL9 | RBR-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology