Basic Information
Locus ID:
nbisL1-mrna-12787
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 3990287 | 3993192 | + | nbisL1-mrna-12787 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 51,499.55 Da | 51.88 | 77.05 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 151 | 430 | 2.30897E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 341 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 395 | 430 | 0.0036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 293 | 1.1E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 172 | 234 | 9.9E-7 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 140 | 431 | 9.77E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 119 | 435 | 4.9E-106 | IPR015943 |
| SMART | SM00320 | WD40_4 | 299 | 341 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 250 | 0.0042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 388 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 254 | 293 | 7.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 210 | 0.077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 391 | 430 | 3.0E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 261 | 293 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 178 | 219 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 398 | 431 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 398 | 431 | 11.471045 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 261 | 293 | 10.627413 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 417 | 431 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 328 | 342 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 197 | 211 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27570.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021640171.1 | cell division cycle 20.2, cofactor of APC complex-like [Hevea brasiliensis] | 0 |
| Q3E906 | Cell division cycle 20.5, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-5 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2C9UID3 | WD_REPEATS_REGION domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G042200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology