Basic Information
Locus ID:
nbisL1-mrna-1277
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 13514013 | 13534512 | + | nbisL1-mrna-1277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 246,885.19 Da | 45.58 | 89.59 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 741 | 838 | 0.00173246 | - |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 480 | 705 | 6.0E-33 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 41 | 285 | 7.2E-70 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1898 | 2065 | 2.3E-12 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 743 | 850 | 1.38E-8 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 741 | 848 | 1.4E-6 | IPR011993 |
| SMART | SM00233 | PH_update | 734 | 845 | 6.9E-5 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 733 | 843 | 7.059 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_048235072.1 | - | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MAA2 | Uncharacterized protein LOC8261314 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology