Basic Information
Locus ID:
nbisL1-mrna-12761
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Lysosomal alpha-mannosidase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 3874403 | 3881435 | - | nbisL1-mrna-12761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.35 | 114,046.04 Da | 38.07 | 84.79 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 38 | 317 | 9.53988E-173 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 39 | 353 | 1.2E-88 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 607 | 820 | 3.6E-46 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 446 | 1.5E-21 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 902 | 1009 | 6.7E-10 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 354 | 5.48E-103 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 452 | 1.01E-27 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 457 | 1012 | 2.83E-139 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1360 | - | 887 | 1013 | 7.2E-33 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 475 | 600 | 9.2E-29 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 868 | 5.9E-91 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 400 | 8.8E-31 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 38 | 321 | 6.8E-118 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 455 | 2.5E-21 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 3.9E-24 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021673404.1 | probable alpha-mannosidase At5g13980 isoform X2 [Hevea brasiliensis] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | B9RA69 | Alpha-mannosidase OS=Ricinus communis OX=3988 GN=RCOM_1503670 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology