Basic Information
Locus ID:
nbisL1-mrna-12744
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 3321093 | 3327735 | - | nbisL1-mrna-12744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 93,703.71 Da | 46.09 | 82.86 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 560 | 693 | 1.06593E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 715 | 756 | 9.8E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 562 | 692 | 4.6E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 522 | 758 | 5.72E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 694 | 771 | 2.7E-94 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 521 | 693 | 2.7E-94 | IPR027417 |
| SMART | SM00382 | AAA_5 | 558 | 695 | 1.1E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 665 | 684 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 201 | - | - |
| Coils | Coil | Coil | 745 | 765 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021671422.1 | nuclear valosin-containing protein-like [Hevea brasiliensis] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A2I4GTV6 | nuclear valosin-containing protein-like OS=Juglans regia OX=51240 GN=LOC109010848 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology