Basic Information
Locus ID:
nbisL1-mrna-12729
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Heat shock protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 3228915 | 3232627 | + | nbisL1-mrna-12729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 60,280.90 Da | 43.60 | 78.47 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00183 | Hsp90 protein | 4 | 512 | 6.0E-236 | IPR001404 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 82 | 337 | 7.59E-111 | IPR020568 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 361 | 483 | 1.05E-38 | IPR037196 |
| Gene3D | G3DSA:3.40.50.11260 | - | 250 | 336 | 3.3E-42 | - |
| Gene3D | G3DSA:3.30.230.80 | - | 81 | 249 | 1.3E-87 | - |
| Gene3D | G3DSA:3.30.565.10 | - | 1 | 41 | 3.3E-9 | IPR036890 |
| Gene3D | G3DSA:1.20.120.790 | - | 337 | 488 | 3.5E-66 | IPR037196 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 2 | 518 | 4.0E-174 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 58 | - | - |
| Coils | Coil | Coil | 342 | 362 | - | - |
| Coils | Coil | Coil | 47 | 67 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
map04217 (Necroptosis)
ko04612 (Antigen processing and presentation)
map04612 (Antigen processing and presentation)
map04621 (NOD-like receptor signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
map04657 (IL-17 signaling pathway)
map04659 (Th17 cell differentiation)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52640.1 | heat shock protein 90.1. Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. | 0 |
| RefSeq | XP_021616382.1 | heat shock protein 83 [Manihot esculenta] | 0 |
| P51819 | Heat shock protein 83 OS=Ipomoea nil OX=35883 GN=HSP83A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9VR81 | Heat shock protein 90 OS=Manihot esculenta OX=3983 GN=MANES_06G152800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology