Basic Information
Locus ID:
nbisL1-mrna-12728
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 3223911 | 3226006 | - | nbisL1-mrna-12728 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 49,368.02 Da | 39.23 | 89.82 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 154 | 214 | 2.0E-5 | IPR001245 |
| Pfam | PF00069 | Protein kinase domain | 220 | 377 | 1.0E-21 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 129 | 381 | 4.59E-52 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 219 | 400 | 4.2E-44 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 113 | 218 | 3.3E-23 | - |
| SMART | SM00220 | serkin_6 | 149 | 379 | 1.9E-9 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 113 | 385 | 17.418049 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 232 | 244 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 155 | 177 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 121 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01540.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021671389.1 | - | 0 |
| Q3EDL4 | Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana OX=3702 GN=At1g01540 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2K1X811 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G146000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13950 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g053380 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30183510 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G10785 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1483 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1574 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010460 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03930 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1434 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12728 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5514 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22444 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.401 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1109 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20552 |
| Salicaceae | Populus euphratica | 1 | populus_peu24678 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631177 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013097 |