Basic Information
Locus ID:
nbisL1-mrna-1272
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 13479544 | 13486500 | + | nbisL1-mrna-1272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.85 | 129,055.50 Da | 61.04 | 56.85 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 700 | 829 | 4.96428E-62 | - |
| CDD | cd00201 | WW | 23 | 52 | 0.00313162 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 712 | 820 | 1.4E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 505 | 675 | 5.4E-50 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 1.51E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 553 | 836 | 2.08E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 457 | 690 | 2.7E-85 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 691 | 861 | 9.3E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 736 | 820 | 9.4E-35 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 3.8E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 500 | 703 | 8.2E-64 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 481 | 509 | 10.401074 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 512 | 686 | 31.439838 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 715 | 859 | 26.02972 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.7974 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 632 | 640 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 1186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 985 | 1026 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1047 | 1061 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_011011361.1 | - | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2XUN4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology