Basic Information
Locus ID:
nbisL1-mrna-12718
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
transcription regulatory region sequence-specific DNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000000F_pilon | 1449661 | 1455310 | - | nbisL1-mrna-12718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 21,898.11 Da | 62.09 | 83.28 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 78 | 5.9448E-42 | IPR033896 |
| Pfam | PF01486 | K-box region | 83 | 143 | 1.3E-15 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.4E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 82 | 1.16E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 94 | 5.7E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 9.1E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 175 | 10.085673 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.767738 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 9.7E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 9.7E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 9.7E-29 | IPR002100 |
| Coils | Coil | Coil | 73 | 93 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.2 | - | 0 |
| RefSeq | XP_002511767.2 | MADS-box protein SOC1 [Ricinus communis] | 0 |
| O64645 | MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M8Z7 | MADS-box protein SOC1 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology