Basic Information
Locus ID:
nbisL1-mrna-12690
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4934585 | 4942462 | - | nbisL1-mrna-12690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 92,560.27 Da | 41.87 | 78.19 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 466 | 515 | 4.7E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 263 | 317 | 1.1E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 554 | 626 | 1.85E-6 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 728 | 813 | 4.41E-8 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 673 | 839 | 9.2E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 570 | 632 | 4.4E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 573 | 630 | 0.0025 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 571 | 632 | 8.9293 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 574 | 629 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 75 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_037496987.1 | uncharacterized protein LOC105636265 [Jatropha curcas] | 0 |
| TrEMBL | A0A067KHI8 | PHD-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_09035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology