Basic Information
Locus ID:
nbisL1-mrna-12657
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4677730 | 4687039 | - | nbisL1-mrna-12657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 185,978.45 Da | 50.70 | 93.83 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1274 | 1669 | 8.70578E-119 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1320 | 1671 | 9.3E-83 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1267 | 1664 | 4.71E-96 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 218 | 622 | 1.11E-30 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 537 | 794 | 9.9E-5 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1554 | 1669 | 3.3E-35 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 195 | 644 | 3.9E-44 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1217 | 1446 | 3.2E-38 | - |
| SMART | SM00119 | hect_3 | 1286 | 1671 | 2.2E-105 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1288 | 1671 | 63.99271 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 203 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021638406.1 | E3 ubiquitin-protein ligase UPL4-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2M423 | HECT-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology