Basic Information
Locus ID:
nbisL1-mrna-12656
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 2801120 | 2805440 | + | nbisL1-mrna-12656 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 141,332.20 Da | 32.34 | 107.44 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1030 | 1299 | 2.88034E-101 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 70 | 2.6E-11 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 292 | 313 | 0.79 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 758 | 777 | 0.31 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1028 | 1296 | 1.3E-46 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 625 | 917 | 3.74E-65 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 367 | 621 | 3.4E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1005 | 1296 | 6.2E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 365 | 1.84E-54 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1100 | 1303 | 2.5E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 629 | 925 | 2.4E-86 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 141 | 216 | 2.4E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 140 | 3.7E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 364 | 628 | 5.7E-75 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 217 | 363 | 1.3E-43 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 987 | 1099 | 3.8E-39 | - |
| SMART | SM00365 | LRR_sd22_2 | 289 | 310 | 250.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 853 | 879 | 65.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 575 | 601 | 390.0 | - |
| SMART | SM00369 | LRR_typ_2 | 217 | 241 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 96 | 121 | 60.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 96 | 125 | 9.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 755 | 778 | 22.0 | - |
| SMART | SM00369 | LRR_typ_2 | 599 | 622 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 829 | 853 | 28.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 337 | 360 | 280.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 168 | 194 | 600.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 683 | 715 | 470.0 | - |
| SMART | SM00369 | LRR_typ_2 | 289 | 313 | 28.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 1024 | 1297 | 9.8E-36 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 877 | 902 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 551 | 575 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 755 | 779 | 4.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 408 | 432 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 708 | 731 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 168 | 191 | 71.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 337 | 361 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 683 | 707 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 192 | 216 | 10.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 757 | 779 | 7.011191 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1024 | 1303 | 38.633183 | IPR000719 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 19 | 5.0 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1030 | 1053 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1146 | 1158 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 195 | 208 | 4.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 755 | 768 | 4.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_002510817.1 | leucine-rich repeat receptor protein kinase EMS1 [Ricinus communis] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | B9R9E2 | Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis OX=3988 GN=RCOM_1496650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |