Basic Information
Locus ID:
nbisL1-mrna-12655
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 2790852 | 2795209 | + | nbisL1-mrna-12655 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 54,062.14 Da | 38.50 | 83.17 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13857 | Ankyrin repeats (many copies) | 171 | 217 | 1.4E-6 | - |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 2.5E-13 | - |
| Pfam | PF00023 | Ankyrin repeat | 112 | 132 | 0.0089 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 264 | 2.33E-40 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 303 | 365 | 4.5E-8 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 5 | 163 | 1.7E-31 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 378 | 2.8E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 164 | 270 | 3.0E-12 | IPR036770 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.2E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 7.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 1.5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 1.8 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.66596 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 10.577295 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.065006 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.08357 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.548809 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 309 | 359 | 9.686208 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 11.14024 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 324 | 333 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 473 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021648639.1 | E3 ubiquitin-protein ligase XBAT33-like [Hevea brasiliensis] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LD08 | Uncharacterized protein MANES_14G027900 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology