Basic Information
Locus ID:
nbisL1-mrna-12647
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
protein-L-isoaspartate O-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 3258953 | 3261639 | - | nbisL1-mrna-12647 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 24,891.31 Da | 40.12 | 89.00 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 86 | 189 | 1.49026E-7 | - |
| Pfam | PF01135 | Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | 12 | 224 | 1.3E-87 | - |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 13 | 200 | 4.85E-41 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 5 | 230 | 2.5E-80 | - |
| TIGRFAM | TIGR00080 | pimt: protein-L-isoaspartate O-methyltransferase | 11 | 226 | 2.9E-67 | IPR000682 |
| ProSitePatterns | PS01279 | Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. | 147 | 162 | - | IPR000682 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48330.1 | protein-l-isoaspartate methyltransferase 1. encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination. | 0 |
| RefSeq | XP_020537471.1 | protein-L-isoaspartate O-methyltransferase 1 isoform X3 [Jatropha curcas] | 0 |
| Q42539 | Protein-L-isoaspartate O-methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=PIMT1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2KGJ6 | Protein-L-isoaspartate O-methyltransferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13004, jg18810, jg25956, jg27537 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5447 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028456 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26681, Sbi_jg33881 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15193 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011794 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73988, Sgl77493 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008256, gene:ENSEOMG00000036106 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0008940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30140330 |
| Apiaceae | Apium graveolens | 1 | Ag5G00723 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G013520, COCNU_11G001840, scaffold008271G000040 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103704948, gene-LOC103709941, gene-LOC103712368 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.605.V1.1, AsparagusV1_09.1074.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G23437, Ftri1G04330 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G48330.1, AT5G50240.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010684m.g.v1.0, Thhalv10014311m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g13720.v2.2, Sp6g12340.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g022890.2N, BniB06g023910.2N, BniB08g034000.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1863 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2030 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g04560, gene.Cymno05g03410 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0347s00009.v1.0, Dusal.0727s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate09g09570, gene.Thate09g12650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.988 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033840 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26895 |
| Poaceae | Echinochloa crus-galli | 6 | AH08.2359, AH09.1324, BH08.2509, BH09.1505, CH08.2696 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4BG0344470, gene-QOZ80_8AG0640450 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0176030.1, HORVU.MOREX.r3.7HG0689050.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030685, gene-QYE76_044581 |
| Poaceae | Oryza coarctata | 4 | Oco07G008760, Oco08G008690, Oco15G014470, Oco16G013750 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g40540.1, LOC_Os08g44280.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G136600, gene-BS78_07G224900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0302339, Pt_Chr0307139, Pt_Chr0403393 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr20G003160, Chr25G009230, Chr29G000480, Chr30G009120 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G590200, Tel7E01G034300, Tel7E01G480900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG049380, gene_TRIDC2BG052110 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G324200.1, TraesCS2B02G357900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb079410_P001, Zm00001eb176270_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7387 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g21475, Zma_g21476, Zma_g23426 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1118, evm.TU.LG12.611, evm.TU.LG18.58 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g07140, gene.Posoc02g04570 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1097, evm.TU.Scaffold_4_RagTag.412 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-1247, nbisL1-mrna-14778, nbisL1-mrna-1683 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20639, nbisL1-mrna-5771 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12647, nbisL1-mrna-1912 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.267, evm.TU.utg000010l.159 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000933, Maker00008859 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14641, nbisL1-mrna-700 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1403, nbisL1-mrna-8729 |
| Salicaceae | Populus euphratica | 2 | populus_peu28758, populus_peu30180 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632560 |
| Solanaceae | Solanum chilense | 1 | SOLCI004736100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012229 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19931_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2557 |
| Zosteraceae | Zostera marina | 1 | Zosma02g22950.v3.1 |