Basic Information
Locus ID:
nbisL1-mrna-12645
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4612818 | 4614421 | + | nbisL1-mrna-12645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 38,646.56 Da | 61.90 | 68.67 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 295 | 338 | 8.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 283 | 343 | 1.64E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 261 | 342 | 4.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 296 | 337 | 9.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 296 | 338 | 12.135206 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 192 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37150.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_043814934.1 | probable E3 ubiquitin-protein ligase HIP1 isoform X2 [Manihot esculenta] | 0 |
| Q9ZQF9 | E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KMT4 | E3 ubiquitin-protein ligase MBR1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14942, jg3457 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20061, gene_8717 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030302 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g162360 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2075, Sbi_jg34442 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2696 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005799 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl71178, Sgl71197, Sgl71198, Sgl71200, Sgl74768, Sgl74770 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005860, gene:ENSEOMG00000036977 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0017500, CQ.Regalona.r1.7BG0018020 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30171270, pistato.v30272330 |
| Apiaceae | Apium graveolens | 2 | Ag11G04598, Ag2G00694 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G003020, COCNU_04G014190, COCNU_12G006790 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709679, gene-LOC103718126 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.248.V1.1, AsparagusV1_05.528.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G07970, Ftri16G26158, Ftri17G19891 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G37150.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016485m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g19460.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g007590.2N, BniB08g023520.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0629, Ceq08G1306 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0643, Cgl08G1332 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g16400, gene.Cymno05g15580 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g17440 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5939 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1409 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006344 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26138 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1041, evm.TU.LG20.1451 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g36370, gene.Posoc07g14170 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1575, evm.TU.Scaffold_2_RagTag.859 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-4342, nbisL1-mrna-5279, nbisL1-mrna-5375 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18796, nbisL1-mrna-21035 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3890, nbisL1-mrna-9971 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.868, evm.TU.utg000016l.558 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005089, Maker00016782 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-12644, nbisL1-mrna-12645, nbisL1-mrna-7731 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-323, nbisL1-mrna-5876 |
| Salicaceae | Populus euphratica | 2 | populus_peu06290, populus_peu20122 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132630077, gene-LOC132630210, gene-LOC132633687 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI001940700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031267 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.27383_chr04_+, gene_18106 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G1279, TC02G1867, TC07G0673 |