Basic Information
Locus ID:
nbisL1-mrna-12632
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4512224 | 4515091 | - | nbisL1-mrna-12632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 74,179.20 Da | 46.55 | 95.77 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 63 | 167 | 4.47157E-44 | - |
| Pfam | PF03000 | NPH3 family | 256 | 519 | 2.9E-92 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 70 | 158 | 3.8E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 61 | 159 | 1.49E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 56 | 161 | 1.3E-10 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 72 | 142 | 11.709058 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 256 | 543 | 93.217056 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 662 | - | - |
| Coils | Coil | Coil | 589 | 616 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_011007684.1 | PREDICTED: BTB/POZ domain-containing protein At5g03250-like isoform X1 [Populus euphratica] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2WYG7 | Phototropic-responsive NPH3 family protein OS=Populus deltoides OX=3696 GN=H0E87_026851 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology