Basic Information
Locus ID:
nbisL1-mrna-12632
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 2579638 | 2583721 | - | nbisL1-mrna-12632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 47,848.66 Da | 34.70 | 77.52 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 343 | 0.008 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 117 | 137 | 7.8E-8 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 147 | 183 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 304 | 0.0077 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 114 | 138 | 4.32E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 145 | 432 | 6.71E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 351 | 439 | 2.8E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 204 | 5.4E-9 | IPR015943 |
| Gene3D | G3DSA:4.10.1000.10 | - | 109 | 137 | 9.5E-6 | - |
| Gene3D | G3DSA:3.30.1370.210 | - | 7 | 67 | 4.9E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 350 | 2.1E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 394 | 431 | 8.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 391 | 9.2 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 54 | 0.18 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 115 | 139 | 9.9E-6 | IPR000571 |
| SMART | SM00320 | WD40_4 | 267 | 304 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 344 | 4.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 260 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 183 | 2.0E-6 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 113 | 140 | 15.271935 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 183 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 29 | 55 | 11.103175 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 274 | 307 | 9.177421 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 183 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 274 | 313 | 12.01227 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 170 | 184 | 5.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 291 | 305 | 5.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 331 | 345 | 5.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 84 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021615892.1 | zinc finger CCCH domain-containing protein 48 isoform X2 [Manihot esculenta] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M7Y4 | Uncharacterized protein MANES_06G142500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology