Basic Information
Locus ID:
nbisL1-mrna-1263
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 10468089 | 10468677 | + | nbisL1-mrna-1263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 17,040.45 Da | 46.72 | 78.38 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 4 | 130 | 3.0E-22 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 138 | 6.09E-32 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 145 | 1.7E-34 | - |
| SMART | SM00220 | serkin_6 | 1 | 148 | 0.004 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 148 | 23.311926 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G09890.1 | Protein kinase family protein. | 0 |
| RefSeq | XP_016687751.1 | serine/threonine-protein kinase tricornered [Gossypium hirsutum] | 0 |
| Q9NBK5 | Serine/threonine-protein kinase tricornered OS=Drosophila melanogaster OX=7227 GN=trc PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J9JS31 | Protein kinase domain-containing protein OS=Gossypium armourianum OX=34283 GN=Goarm_009189 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2901.V1.1, AsparagusV1_Unassigned.80.V1.1 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1263 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1587 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27470 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g00640, gene.Posoc01g35000 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.538 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007975 |
| Salicaceae | Populus euphratica | 1 | populus_peu21550 |