Basic Information
Locus ID:
nbisL1-mrna-12628
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 3137244 | 3139265 | - | nbisL1-mrna-12628 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 74,793.86 Da | 38.95 | 85.93 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 31 | 272 | 4.86091E-66 | IPR001220 |
| CDD | cd14066 | STKc_IRAK | 365 | 628 | 2.36116E-96 | - |
| Pfam | PF00069 | Protein kinase domain | 360 | 627 | 2.4E-53 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 31 | 282 | 5.4E-63 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 29 | 285 | 7.0E-54 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 336 | 629 | 9.02E-82 | IPR011009 |
| Gene3D | G3DSA:2.60.120.200 | - | 29 | 285 | 1.0E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 344 | 434 | 1.7E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 435 | 641 | 8.3E-61 | - |
| SMART | SM00220 | serkin_6 | 359 | 630 | 2.7E-43 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 359 | 630 | 38.463573 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 479 | 491 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 365 | 387 | - | IPR017441 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 146 | 152 | - | IPR019825 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15530.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_021650382.1 | L-type lectin-domain containing receptor kinase S.1 [Hevea brasiliensis] | 0 |
| Q9M9E0 | L-type lectin-domain containing receptor kinase S.1 OS=Arabidopsis thaliana OX=3702 GN=LECRKS1 PE=1 SV=1 | 0 | |
| TrEMBL | B9RAV4 | Carbohydrate binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1508870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18789 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30139870 |
| Apiaceae | Apium graveolens | 1 | Ag9G00575 |
| Arecaceae | Cocos nucifera | 1 | scaffold139380G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696642 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G33985 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007025m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13890.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g026320.2N, BniB05g024760.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1903 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2071 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g03250 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.674 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022174 |
| Posidoniaceae | Posidonia oceanica | 11 | gene.Posoc01g06860, gene.Posoc01g06890, gene.Posoc01g17230 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1070 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14748 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5039 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12628 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000010l.54 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008707 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17036 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8706 |
| Salicaceae | Populus euphratica | 3 | populus_peu28705, populus_peu30130, populus_peu30131 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632599 |
| Solanaceae | Solanum chilense | 1 | SOLCI005418400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014547 |