Basic Information
Locus ID:
nbisL1-mrna-12614
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4313547 | 4317987 | + | nbisL1-mrna-12614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 69,537.76 Da | 59.34 | 83.48 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16450 | mRING-C3HGC3_RFWD3 | 114 | 164 | 2.55148E-23 | - |
| Pfam | PF13639 | Ring finger domain | 117 | 164 | 6.9E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 170 | 8.84E-14 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 333 | 492 | 1.57E-12 | IPR036322 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 231 | 2.9E-12 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 320 | 502 | 3.8E-9 | IPR015943 |
| SMART | SM00184 | ring_2 | 118 | 163 | 0.0016 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 164 | 11.95817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 44 | - | - |
| Coils | Coil | Coil | 212 | 232 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03450.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011018781.1 | PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Populus euphratica] | 0 |
| A0A1L8GLK3 | E3 ubiquitin-protein ligase rfwd3.L OS=Xenopus laevis OX=8355 GN=rfwd3.L PE=1 SV=1 | 0 | |
| TrEMBL | A0A836IKF6 | E3 ubiquitin-protein ligase OS=Salix suchowensis OX=1278906 GN=IMY05_006G0104200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3501 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14331 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030655 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27168, Sbi_jg33381 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8063 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005737 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71275, Sgl74849 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000035776, gene:ENSEOMG00000036193 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0018260, CQ.Regalona.r1.7AG0018280 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30273440 |
| Apiaceae | Apium graveolens | 1 | Ag4G01628 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G011160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714133 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1533.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G05343, Ftri17G14197 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G03450.1, AT5G03750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013047m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g39290.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g030560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1376 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1408 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g01300 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0094s00010.v1.0, Dusal.0287s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22410 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1518, evm.TU.LG05.2094 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00006296, Pov_00006303, Pov_00006309 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26098 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3023, AH01.5027, BH01.3359, BH01.5163, CH01.3605 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0115560, gene-QOZ80_2BG0169360 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0055410.1, HORVU.MOREX.r3.4HG0418370.1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_013871, gene-QYE76_019151, gene-QYE76_027300 ... |
| Poaceae | Oryza coarctata | 3 | Oco06G000450, Oco19G009380, Oco20G009270 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g01790.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_01G296400, gene-BS78_01G512200 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0100926, Pt_Chr0100951, Pt_Chr0100961, Pt_Chr0105812 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr07G000270, Chr09G004150, Chr09G009130, Chr13G015890 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G354700, Tel4E01G620100, Tel4E01G620300 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG031060, gene_TRIDC1BG036520 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G206000.1, TraesCS1B02G219500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb000650_P001, Zm00001eb393970_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-3195, nbis-gene-36238 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12844, Zma_g2271 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.946, evm.TU.LG10.1632 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g06150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.904 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4298 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15397 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10016 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.899 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005982 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12614 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5830 |
| Salicaceae | Populus euphratica | 2 | populus_peu11647, populus_peu20057 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629991 |
| Solanaceae | Solanum chilense | 1 | SOLCI006631400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029570 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.27311_chr04_+, gene_7546 |
| Tamaricaceae | Tamarix chinensis | 2 | TC00000075, TC02G1936 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26300.v3.1 |