Basic Information
Locus ID:
nbisL1-mrna-12600
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 2969369 | 2972221 | + | nbisL1-mrna-12600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 30,475.78 Da | 44.70 | 88.19 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 105 | 221 | 4.45E-9 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 3 | 63 | 6.3E-5 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 104 | 178 | 1.2E-6 | - |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 1 | 64 | 9.274326 | IPR002902 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 282 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40380.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_034909167.1 | cysteine-rich receptor-like protein kinase 1 [Populus alba] | 0 |
| Q9FNE1 | Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana OX=3702 GN=CRK42 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2XIH6 | Gnk2-homologous domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_022282 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1037 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14716, nbisL1-mrna-14717 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5018 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12600 |
| Salicaceae | Populus euphratica | 2 | populus_peu30147, populus_peu30148 |
| Solanaceae | Solanum chilense | 1 | SOLCI004021600 |